About our research
The 3D layout of chromatin plays important roles in the establishment of gene expression programs governing cell fate decisions. We are addressing four main questions:
- What regulates 3D genome conformation during adipose stem cell differentiation?
- How do laminopathy-causing lamin mutations affect chromatin conformation?
- How do histone variants contribute to chromatin homeostasis?
- How do cells regulate the integrity of their nuclear envelope?
Our work combines cell biological, biochemical, genomics and compational modeling approaches using patient material and engineered stem cells.
The lab’s research history in brief
- disassembly and reformation of the nuclear envelope (Steen 2000 J Cell Biol; Steen 2001 J Cell Biol; Martins 2003 J Cell Biol)
- cell and nuclear reprogramming (Håkelien 2002 Nature Biotech; Taranger 2005 Mol Biol Cell; Freberg 2007 Mol Biol Cell)
- chromatin immunoprecipitation (ChIP) assays for small cell numbers (Dahl 2008 Nature Protoc; 2009 Genome Biol)
- epigenetic patterning of developmental gene expression (Lindeman 2011 Dev Cell; Andersen 2012 Genome Biol) and adipocyte differentiation (Boquest 2007 Stem Cells; Sørensen 2010 Mol Biol Cell; Shah 2014 BMC Genomics; Rønningen 2015 BBRC)
- nuclear lamin-chromatin interactions during adipogenic differentiation and in laminopathies (Lund 2013 Genome Res; Lund 2015 Nucl Acids Res; Oldenburg 2014 Hum Mol Genet; Rønningen 2015 Genome Res; Oldenburg 2017 J Cell Biol; Briand 2018 Hum Mol Genet)
- mechanisms of deposition of histone H3.3 on chromatin (Delbarre 2010 Mol Biol Cell; Delbarre 2013 Genome Res; Ivanauskiene 2014 Genome Res: Delbarre 2017 Genome Res; Udugama 2018 PNAS [Lee Wong lab])
- Computational 3D genome modeling (Paulsen 2017 Genome Biol; Paulsen 2018 Nature Protoc)