About our research
The 3- and 4-dimensional layouts of chromatin play important roles in the establishment of gene expression programs that govern cell fate decisions. We are addressing the following questions:
- How do changes in 3D chromatin conformation regulate adipose differentiation and function?
- How do lamin mutations causing lipodystrophies affect chromatin architecture?
- How do sugars and fatty acids regulate transcription?
- How does histone H3.3 regulate nuclear architecture?
- How do cells regulate integrity of the nuclear envelope?
Our work combines molecular, genomics, imaging and computational modeling approaches using patient cells and engineered stem cells.
Our lab’s research history in brief
- disassembly and reformation of the nuclear envelope (Steen 2000 J Cell Biol; Steen 2001 J Cell Biol; Martins 2003 J Cell Biol)
- cell and nuclear reprogramming (Håkelien 2002 Nature Biotech; Taranger 2005 Mol Biol Cell; Freberg 2007 Mol Biol Cell)
- chromatin immunoprecipitation (ChIP) for small cell numbers (Dahl 2008 Nature Protoc; 2009 Genome Biol)
- epigenetic patterning of developmental gene expression (Lindeman 2011 Dev Cell; Andersen 2012 Genome Biol) and adipocyte differentiation (Boquest 2007 Stem Cells; Sørensen 2010 Mol Biol Cell; Shah 2014 BMC Genomics)
- chromatin dynamics during adipogenic differentiation, including lamina-chromatin interactions (Lund 2013 Genome Res; Lund 2015 Nucl Acids Res; Oldenburg 2014 Hum Mol Genet; Rønningen 2015 Genome Res; Oldenburg 2017 J Cell Biol; Briand 2018 Hum Mol Genet; Paulsen 2019 Nature Genet)
- deposition of histone variant H3.3 into chromatin (Delbarre 2010 Mol Biol Cell; Delbarre 2013 Genome Res; Ivanauskiene 2014 Genome Res: Delbarre 2017 Genome Res; Udugama 2018 PNAS [Lee Wong lab, Monash U])
- computational 3D genome modeling (Paulsen 2017 Genome Biol; Paulsen 2018 Nature Protoc)